PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G07380.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 843aa    MW: 90989.3 Da    PI: 6.8924
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G07380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OGLUM01G07380.2 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP

2START99.18.2e-321793502202
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  OGLUM01G07380.2 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                       +l+a+++l+p Rdf+ +R+ +   +            +++p   ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+
  OGLUM01G07380.2 259 -NLYAPTTLAPaRDFWLLRSKQG--G------------PSMPL-VQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESS 336
                      .799***************9666..3............44444.4569********************************************** PP

                      HHHHHHHHHHHTXX CS
            START 189 laegaktwvatlqr 202
                      ++ ++k+ +a ++ 
  OGLUM01G07380.2 337 AMVAQKISMALCKI 350
                      *********99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
CDDcd000863.77E-161272No hitNo description
PfamPF000462.2E-161270IPR001356Homeobox domain
SuperFamilySSF466898.55E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181470IPR009057Homeodomain-like
CDDcd146864.12E-664103No hitNo description
Gene3DG3DSA:3.30.530.202.3E-6177329IPR023393START-like domain
SuperFamilySSF559611.65E-24178338No hitNo description
SMARTSM002341.5E-19178354IPR002913START domain
PfamPF018522.8E-29179349IPR002913START domain
PROSITE profilePS5084810.318249336IPR002913START domain
PfamPF086703.5E-48694842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGRM  120
RRVPAFPPQA AAPAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRSKQG GPSMPLVQPF IRGEMLPSGF  300
LIRPSDGGGS VIHIVDHMDL EPWSVPEVVR PLYESSAMVA QKISMALCKI QALRYLRQVA  360
HEDTRSVITG WGRQPAALRA LSQKLTRGFN ETLNGLADDG WSVIESDGVD DVCISVNSSK  420
VIGCNATFSS GLPIVSTGVL CAKASMLLQD VSPPSLLQFL REHRSQWADS NLDAFFASAM  480
KPNFCNLPMS RLGGFSGQVI LPLAHTFEPE EFLEVIKLGN ASNYQDTLVH RDLFLLQMYN  540
GVEESSAGTC SELIFAPIDA SFSDDSPLLP SGFRIIPIDS PLDTSSPNCT LDLASTLEAA  600
TPRSRISGVN GGGGGGCAAA AASSKAVMTI AFQFAFDGHL QDSVAAMARQ YMRSIISSVQ  660
RIAVALSSSR LVPPAGAGGG AAPQLAPANP EAATLPRWIC QSFRFHFGAE LIKSVDANSS  720
SESILKAVWH HPSAILCCSL KAMPVFTFAN QSGLDMLETT LVALQDMTLE KVFDDQGRKN  780
LCTELPNIME QGMACMEGGV CVSSVGRAAS YEKAVAWKVV DGDGGGGGGA HCICFMFINW  840
TFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0PREDICTED: homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0D9Y4V30.0A0A0D9Y4V3_9ORYZ; Uncharacterized protein
STRINGBGIOSGA002186-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein